The reason I say run it through all stages but DI first is because you need pressure to pass through the RO membrane for it to work properly. You can run it like normal with your booster pump and make RO water. Then you can pump it through your DI stage with any regular pump as it does not need the pressure that the RO membrane requires. Either way will work just fine. 6 in one, half dozen in the other. Lots of good info in this thread. This is a common problem with well water and many do not know or realize it.